2020 – : Multiphoton ionization and RABITT in molecules using the stationary R-matrix approach.

2018 – 2020: R-MADAM: R-matrix suites for multielectron attosecond dynamics in atoms and molecules irradiated by arbitrarily polarised light.

2012 – 2018: Hex: Hydrogen-electron collision solver. (2014 – 2016: Project GAUK730214)

Jaroslav Zamastil, Jakub Benda: Quantum mechanics and electrodynamics, Springer International Publishing, 2017, ISBN 978-3-319-65779-0.

Jakub Benda: Astrophysically important processes in collisions of electrons with hydrogen atoms, PhD thesis, Praha 2017.

Jaroslav Zamastil, Jakub Benda: Kvantová mechanika a elektrodynamika, Karolinum, Praha 2016, ISBN 978-80-246-3223-0.

Dominik Ertel, David Busto, Ioannis Makos, Marvin Schmoll, Jakub Benda, Francesca Bragheri, Roberto Osellame, Eva Lindroth, Serguei Patchkovskii, Zdeněk Mašín, Giuseppe Sansone: Anisotropy Parameters for Two-Color Photoionization Phases in Randomly Oriented Molecules: Theory and Experiment in Methane and Deuteromethane, J. Phys. Chem. A 128 (2024) 1685–1697.

Karel Houfek, Jakub Benda, Zdeněk Mašín, Alex Harvey, Thomas Meltzer, Vincent Graves, Jimena D. Gorfinkiel: UKRmol-scripts: A Perl-based system for the automated operation of the photoionization and electron/positron scattering suite UKRmol+, Comput. Phys. Commun. 298 (2024) 109113.

Jakub Benda, Zdeněk Mašín: Dipole-laser coupling delay in two-color RABBITT photoionization of polar molecules, Phys. Rev. A 109 (2024) 013106.

Dominik Ertel, David Busto, Ioannis Makos, Marvin Schmoll, Jakub Benda, Hamed Ahmadi, Matteo Moioli, Fabio Frassetto, Luca Poletto, Claus Dieter Schröter, Thomas Pfeifer, Robert Moshammer, Zdeněk Mašín, Serguei Patchkovskii, Giuseppe Sansone: Influence of nuclear dynamics on molecular attosecond photoelectron interferometry, Sci. Adv. 9 (2023) eadh7747.

Serguei Patchkovskii, Jakub Benda, Dominik Ertel, David Busto: Theory of nuclear motion in RABBITT spectra, Phys. Rev. A 107 (2023) 043105.

Wenyu Jiang, Gregory S. J. Armstrong, Jihong Tong, Yidan Xu, Zitan Zuo, Junjie Qiang, Peifen Lu, Daniel D. A. Clarke, Jakub Benda, Avner Fleischer, Hongcheng Ni, Kiyoshi Ueda, Hugo W. van der Hart, Andrew C. Brown, Xiaochun Gong, Jian Wu: Atomic partial wave meter by attosecond coincidence metrology, Nat. Commun. 13 (2022) 5072.

Tereza Uhlířová, Jaroslav Zamastil, Jakub Benda: Calculation of atomic integrals between relativistic functions by means of algebraic methods, Comput. Phys. Commun. 280 (2022) 108490.

Jakub Benda, Zdeněk Mašín, Jimena D. Gorfinkiel: Analysis of RABITT time delays using the stationary multiphoton molecular R-matrix approach, Phys. Rev. A 105 (2022) 053101.

Jakub Benda, Zdeněk Mašín: Multi-photon above threshold ionization of multi-electron atoms and molecules using the R-matrix approach, Sci. Rep. 11 (2021) 11686.

Greg S. J. Armstrong, Daniel D. A. Clarke, Jakub Benda, Jack Wragg, Andrew C. Brown, Hugo van der Hart: Enhancing spin polarization using ultrafast angular streaking, Phys. Rev. A 103 (2021) 053123.

Jakub Benda, Jimena D. Gorfinkiel, Zdeněk Mašín, Greg S. J. Armstrong, Andrew C. Brown, Daniel D. A. Clarke, Hugo W. van der Hart, Jack Wragg: Perturbative and non-pertrurbative photoionization of H2 and H2O using the molecular R-matrix-with-time method, Phys. Rev. A 102 (2020) 052826.

Greg S. J. Armstrong, Daniel D. A. Clarke, Jakub Benda, Andrew C. Brown, and Hugo W. van der Hart: Electron correlation and short-range dynamics in attosecond angular streaking, Phys. Rev. A 101 (2020) 041401(R).

Andrew C. Brown, Greg S. J. Armstrong, Jakub Benda, Daniel D. A. Clarke, Jack Wragg, Kathryn R. Hamilton, Zdeněk Mašín, Jimena D. Gorfinkiel, Hugo van der Hart: RMT: R-matrix with time-dependence. Solving the semi-relativistic, time-dependent Schrodinger equation for general, multi-electron atoms and molecules in intense, ultrashort, arbitrarily polarized laser pulses, Comput. Phys. Commun. 250 (2020) 107062.

Zdeněk Mašín, Jakub Benda, Jimena D. Gorfinkiel, Alex G. Harvey, Jonathan Tennyson: UKRmol+: a suite for modelling of electronic processes in molecules interacting with electrons, positrons and photons using the R-matrix method, Comput. Phys. Commun. 249 (2020) 107092.

Greg S. J. Armstrong, Daniel D. A. Clarke, Jakub Benda, Jack Wragg, Andrew C. Brown, Hugo van der Hart: Modeling tomographic measurements of photoelectron vortices in counter-rotating circularly polarized laser pulses, Phys. Rev. A 100 (2019) 063416.

Bridgette Cooper, Maria Tudorovskaya, Sebastian Mohr, Aran O'Hare, Martin Hanicinec, Anna Dzarasova, Jimena Gorfinkiel, Jakub Benda, Zdeněk Mašín, Ahmed Al-Refaie, Peter Knowles, Jonathan Tennyson: Quantemol Electron Collisions (QEC): An Enhanced Expert System for Performing Electron Molecule Collision Calculations Using the R-matrix Method, Atoms 7 (2019) 97.

Jakub Benda, Karel Houfek: Converged and consistent high-resolution low-energy electron–hydrogen scattering. I. Data below n = 4 threshold for applications in stellar physics, At. Data Nucl. Data Tables 119 (2018) 303–313.

Jakub Benda, Karel Houfek: Reducing the dimensionality of grid based methods for electron-atom scattering calculations below ionization threshold, Comput. Phys. Commun. 213 (2017) 46–51.

Jakub Benda, Karel Houfek: New version of hex-ecs, the B-spline implementation of exterior complex scaling method for solution of electron–hydrogen scattering, Comput. Phys. Commun. 204 (2016) 216–217.

Tomáš Lukeš, Pavel Křížek, Zdeněk Švindrych, Jakub Benda, Martin Ovesný, Karel Fliegel, Miloš Klíma, Guy M Hagen: Three-dimensional super-resolution structured illumination microscopy with maximum a posteriori probability image estimation, Opt. Express 22 (2014) 29805–29817.

Jakub Benda, Karel Houfek: Collisions of electrons with hydrogen atoms II. Low-energy program using the method of the exterior complex scaling, Comput. Phys. Commun. 185 (2014) 2903–2912.

Jakub Benda, Karel Houfek: Collisions of electrons with hydrogen atoms I. Package outline and high energy code, Comput. Phys. Commun. 185 (2014) 2893–2902.

Jakub Benda, Karel Houfek: Quantum collisions of electrons with hydrogen atoms, in: K. Pešatová, B. Poláková, J. Cawley (Eds.), Supercomputing in Science and Engineering, p. 210–212, IT4Innovations National Supercomputing Center, Ostrava 2017, ISBN 978-80-248-4037-6.

Jakub Benda, Karel Houfek: Hydrogen-Electron Scattering for Astrophysical Applications, in: J. Šafránková, J. Pavlů (Eds.), WDS'13 Proceedings of Contributed Papers, Part III — Physics, p. 19–24, Matfyzpress, Praha 2013, ISBN 978-80-7378-252-8.